全部博文（221）
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2008-05-13 18:08:18
Excerpts from file 1FDL.PDB:
HEADER COMPLEX (ANTIBODY-ANTIGEN) 27-AUG-90 1FDL 1FDL 2
COMPND IG*G1 FAB FRAGMENT (ANTI-LYSOZYME ANTIBODY D1.3, KAPPA) 1FDL 3
COMPND 2 - LYSOZYME (E.C.3.2.1.17) COMPLEX 1FDL 4
SOURCE MOUSE (MUS $MUSCULUS) FROM BALB/$C STRAIN AND 1FDL 5
SOURCE 2 HEN (GALLUS $GALLUS) EGG WHITE 1FDL 6
AUTHOR T.O.FISCHMANN,R.J.POLJAK 1FDL 7
REVDAT 1 15-OCT-91 1FDL 0 1FDL 8
JRNL AUTH T.O.FISCHMANN,G.A.BENTLEY,T.N.BHAT,G.BOULOT, 1FDL 9
JRNL AUTH 2 R.A.MARIUZZA,S.E.V.PHILLIPS,D.TELLO,R.J.POLJAK 1FDL 10
JRNL TITL CRYSTALLOGRAPHIC REFINEMENT OF THE 1FDL 11
JRNL TITL 2 THREE-DIMENSIONAL STRUCTURE OF THE 1FDL 12
JRNL TITL 3 FAB*D1.3-*LYSOZYME COMPLEX AT 2.5-*ANGSTROMS 1FDL 13
JRNL TITL 4 RESOLUTION 1FDL 14
JRNL REF J.BIOL.CHEM. V. 266 12915 1991 1FDL 15
JRNL REFN ASTM JBCHA3 US ISSN 0021-9258 071 1FDL 16
REMARK 1 1FDL 17
REMARK 2 1FDL 18
REMARK 2 RESOLUTION. 2.5 ANGSTROMS. 1FDL 19
REMARK 3 1FDL 20
REMARK 3 REFINEMENT. BY THE MOLECULAR DYNAMICS PROCEDURES OF A. 1FDL 21
REMARK 3 BRUENGER, J. KURIYAN, AND M. KARPLUS (PROGRAM "XPLOR"). 1FDL 22
REMARK 3 THE R VALUE IS 0.184. THE RMS DEVIATION FROM IDEALITY OF 1FDL 23
REMARK 3 THE BOND DISTANCES IS 0.013 ANGSTROMS. THE RMS DEVIATION 1FDL 24
REMARK 3 FROM IDEALITY OF THE BOND ANGLES IS 3.3 DEGREES. 1FDL 25
REMARK 4 1FDL 26
REMARK 4 CHAIN "L" REPRESENTS ANTIBODY LIGHT CHAIN RESIDUES. CHAIN 1FDL 27
REMARK 4 "H" REPRESENTS ANTIBODY HEAVY CHAIN RESIDUES. CHAIN "Y" 1FDL 28
REMARK 4 REPRESENTS LYSOZYME. 1FDL 29
SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO ALA SER LEU SER ALA 1FDL 30
SEQRES 2 L 214 SER VAL GLY GLU THR VAL THR ILE THR CYS ARG ALA SER 1FDL 31
[13 lines omitted]
SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER 1FDL 45
SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS 1FDL 46
SEQRES 1 H 218 GLN VAL GLN LEU LYS GLU SER GLY PRO GLY LEU VAL ALA 1FDL 47
SEQRES 2 H 218 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY 1FDL 48
[13 lines omitted]
SEQRES 16 H 218 VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS 1FDL 62
SEQRES 17 H 218 VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS 1FDL 63
SEQRES 1 Y 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS 1FDL 64
SEQRES 2 Y 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY 1FDL 65
[6 lines omitted]
SEQRES 9 Y 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY 1FDL 72
SEQRES 10 Y 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU 1FDL 73
FTNOTE 1 1FDL 74
FTNOTE 1 RESIDUES PRO L 8, PRO L 95, PRO L 141, PRO H 150, PRO H 152 1FDL 75
FTNOTE 1 AND PRO H 192 ARE CIS PROLINES. 1FDL 76
SSBOND 1 CYS L 23 CYS L 88 1FDL 77
SSBOND 2 CYS L 134 CYS L 194 1FDL 78
SSBOND 3 CYS H 22 CYS H 95 1FDL 79
SSBOND 4 CYS H 143 CYS H 198 1FDL 80
SSBOND 5 CYS L 214 CYS H 218 1FDL 81
SSBOND 6 CYS Y 6 CYS Y 127 1FDL 82
SSBOND 7 CYS Y 30 CYS Y 115 1FDL 83
SSBOND 8 CYS Y 64 CYS Y 80 1FDL 84
SSBOND 9 CYS Y 76 CYS Y 94 1FDL 85
CRYST1 56.000 143.500 49.300 90.00 120.40 90.00 P 21 2 1FDL 86
ORIGX1 1.000000 0.000000 0.000000 0.00000 1FDL 87
ORIGX2 0.000000 1.000000 0.000000 0.00000 1FDL 88
ORIGX3 0.000000 0.000000 1.000000 0.00000 1FDL 89
SCALE1 0.017857 0.000000 0.010477 0.00000 1FDL 90
SCALE2 0.000000 0.006969 0.000000 0.00000 1FDL 91
SCALE3 0.000000 0.000000 0.023517 0.00000 1FDL 92
ATOM 1 N ASP L 1 4.060 7.307 5.186 1.00 51.58 1FDL 93
ATOM 2 CA ASP L 1 4.042 7.776 6.553 1.00 48.05 1FDL 94
ATOM 3 C ASP L 1 2.668 8.426 6.644 1.00 49.84 1FDL 95
ATOM 4 O ASP L 1 1.987 8.438 5.606 1.00 50.83 1FDL 96
ATOM 5 CB ASP L 1 5.090 8.827 6.797 1.00 50.57 1FDL 97
ATOM 6 CG ASP L 1 6.338 8.761 5.929 1.00 54.09 1FDL 98
ATOM 7 OD1 ASP L 1 6.576 9.758 5.241 1.00 56.90 1FDL 99
ATOM 8 OD2 ASP L 1 7.065 7.759 5.948 1.00 51.06 1FDL 100
ATOM 9 N ILE L 2 2.249 8.961 7.803 1.00 45.48 1FDL 101
ATOM 10 CA ILE L 2 0.920 9.547 7.949 1.00 38.04 1FDL 102
ATOM 11 C ILE L 2 0.950 11.039 7.634 1.00 39.85 1FDL 103
ATOM 12 O ILE L 2 1.800 11.770 8.153 1.00 39.76 1FDL 104
ATOM 13 CB ILE L 2 0.438 9.271 9.402 1.00 37.16 1FDL 105
ATOM 14 CG1 ILE L 2 0.290 7.766 9.577 1.00 31.41 1FDL 106
ATOM 15 CG2 ILE L 2 -0.884 9.974 9.690 1.00 34.89 1FDL 107
ATOM 16 CD1 ILE L 2 0.141 7.273 11.009 1.00 32.83 1FDL 108
ATOM 17 N GLN L 3 0.062 11.520 6.774 1.00 41.12 1FDL 109
[1,640 lines omitted here]
ATOM 1658 OE2 GLU L 213 -2.454 63.348 -21.174 1.00 60.81 1FDL1750
ATOM 1659 N CYS L 214 2.669 65.274 -17.328 1.00 67.92 1FDL1751
ATOM 1660 CA CYS L 214 3.648 65.325 -16.253 1.00 76.32 1FDL1752
ATOM 1661 C CYS L 214 3.046 65.575 -14.891 1.00 82.45 1FDL1753
ATOM 1662 O CYS L 214 1.879 65.984 -14.818 1.00 84.00 1FDL1754
ATOM 1663 CB CYS L 214 4.667 66.394 -16.551 1.00 73.55 1FDL1755
ATOM 1664 SG CYS L 214 3.737 67.825 -17.102 1.00 74.12 1FDL1756
ATOM 1665 OXT CYS L 214 3.745 65.292 -13.910 1.00 87.87 1FDL1757
TER 1666 CYS L 214 1FDL1758
ATOM 1667 N GLN H 1 14.408 26.649 34.573 1.00 65.52 1FDL1759
ATOM 1668 CA GLN H 1 13.728 27.465 33.589 1.00 66.30 1FDL1760
ATOM 1669 C GLN H 1 14.331 26.983 32.262 1.00 64.19 1FDL1761
ATOM 1670 O GLN H 1 15.552 27.006 32.087 1.00 61.76 1FDL1762
ATOM 1671 CB GLN H 1 14.011 28.962 33.896 1.00 67.99 1FDL1763
ATOM 1672 CG GLN H 1 15.424 29.594 33.797 1.00 76.04 1FDL1764
ATOM 1673 CD GLN H 1 16.531 28.988 34.662 1.00 79.07 1FDL1765
ATOM 1674 OE1 GLN H 1 16.301 28.004 35.383 1.00 77.95 1FDL1766
ATOM 1675 NE2 GLN H 1 17.749 29.509 34.607 1.00 79.90 1FDL1767
ATOM 1676 N VAL H 2 13.472 26.442 31.391 1.00 57.95 1FDL1768
[1,626 lines omitted]
ATOM 3302 OD2 ASP H 217 12.058 66.961 -14.107 1.00100.99 1FDL3394
ATOM 3303 N CYS H 218 7.790 69.673 -15.262 1.00103.02 1FDL3395
ATOM 3304 CA CYS H 218 7.374 70.217 -16.559 1.00102.15 1FDL3396
ATOM 3305 C CYS H 218 6.944 71.706 -16.414 1.00106.32 1FDL3397
ATOM 3306 O CYS H 218 6.956 72.459 -17.395 1.00108.19 1FDL3398
ATOM 3307 CB CYS H 218 6.200 69.442 -17.175 1.00 94.23 1FDL3399
ATOM 3308 SG CYS H 218 4.655 69.396 -16.236 1.00 86.45 1FDL3400
ATOM 3309 OXT CYS H 218 6.617 72.154 -15.303 1.00108.54 1FDL3401
TER 3310 CYS H 218 1FDL3402
ATOM 3311 N LYS Y 1 0.829 -12.809 39.408 1.00 35.17 1FDL3403
ATOM 3312 CA LYS Y 1 0.556 -13.062 38.012 1.00 33.11 1FDL3404
ATOM 3313 C LYS Y 1 1.717 -12.458 37.226 1.00 36.27 1FDL3405
ATOM 3314 O LYS Y 1 2.410 -11.604 37.787 1.00 41.24 1FDL3406
ATOM 3315 CB LYS Y 1 -0.725 -12.392 37.613 1.00 32.88 1FDL3407
ATOM 3316 CG LYS Y 1 -1.037 -12.514 36.140 1.00 33.65 1FDL3408
ATOM 3317 CD LYS Y 1 -2.418 -11.968 35.977 1.00 36.28 1FDL3409
ATOM 3318 CE LYS Y 1 -2.753 -12.152 34.529 1.00 41.85 1FDL3410
ATOM 3319 NZ LYS Y 1 -4.166 -11.870 34.339 1.00 50.96 1FDL3411
ATOM 3320 N VAL Y 2 2.033 -12.918 36.016 1.00 28.01 1FDL3412
[981 lines omitted]
ATOM 4302 NH2 ARG Y 128 -6.600 -8.270 17.957 1.00 82.91 1FDL4394
ATOM 4303 N LEU Y 129 -6.283 -1.699 22.247 1.00 51.73 1FDL4395
ATOM 4304 CA LEU Y 129 -6.641 -0.961 23.463 1.00 49.11 1FDL4396
ATOM 4305 C LEU Y 129 -7.953 -0.253 23.204 1.00 58.35 1FDL4397
ATOM 4306 O LEU Y 129 -8.620 0.062 24.193 1.00 63.28 1FDL4398
ATOM 4307 CB LEU Y 129 -5.658 0.120 23.795 1.00 38.11 1FDL4399
ATOM 4308 CG LEU Y 129 -4.328 -0.259 24.311 1.00 37.92 1FDL4400
ATOM 4309 CD1 LEU Y 129 -3.354 0.848 24.035 1.00 40.40 1FDL4401
ATOM 4310 CD2 LEU Y 129 -4.419 -0.497 25.787 1.00 42.85 1FDL4402
ATOM 4311 OXT LEU Y 129 -8.279 -0.012 22.026 1.00 62.00 1FDL4403
TER 4312 LEU Y 129 1FDL4404
CONECT 160 159 672 1FDL4405
[15 lines omitted]
CONECT 4199 3548 4198 1FDL4421
CONECT 4291 3358 4290 1FDL4422
MASTER 13 3 0 0 0 0 0 6 4309 3 18 44 1FDL4423
END
