FIRST:KMP--abstract
It's a algorithm improving from sample matching algorithm (BF algorithm).
It's detail description can view in WIKI from below:
%E2%80%93Morris%E2%80%93Pratt_algorithm
SECOND:the coding in Cpp
below code is from github!!
the kmp.h file
-
/*******************************************************************************
-
* ALGORITHM IMPLEMENTAIONS
-
*
-
* /\ | _ _ ._ o _|_ |_ ._ _ _
-
* /--\ | (_| (_) | | |_ | | | | | _>
-
* _|
-
*
-
* KNUTH-MORRIS-PRATT ALGORITHMS
-
*
-
* Features:
-
* Complexity is O(n + k), where n is the target string length,
-
* and k is the pattern length
-
*
-
* http://en.wikipedia.org/wiki/Knuth%E2%80%93Morris%E2%80%93Pratt_algorithm
-
*
-
******************************************************************************/
-
-
#ifndef __KMP_H__
-
#define __KMP_H__
-
#include <string.h>
-
-
namespace alg {
-
static void kmp_table(const char *W, int * T, int len);
-
/**
-
* S -> the text to be searched
-
* W -> the word to search
-
* return the position where W is found S
-
*/
-
static int kmp_search(const char * S, const char * W) {
-
int LEN_S = strlen(S);
-
int LEN_W = strlen(W);
-
-
int m = 0;
-
int i = 0;
-
int T[LEN_W];
-
-
kmp_table(W,T, LEN_W);
-
-
while (m+i < LEN_S) {
-
if (W[i] == S[m+i]) {
-
if (i == LEN_W -1) {
-
return m;
-
}
-
i++;
-
} else {
-
m = m+i-T[i];
-
if (T[i] > -1) {
-
i = T[i];
-
} else {
-
i = 0;
-
}
-
}
-
}
-
return -1;
-
}
-
-
/**
-
* build a table for the word to be searched
-
* eg:
-
* i 0 1 2 3 4 5 6
-
* W[i] A B C D A B D
-
* T[i] -1 0 0 0 0 1 2
-
*/
-
static void kmp_table(const char *W, int * T, int len) {
-
int pos = 2; // the current position we are computing in T
-
int cnd = 0; // the next character of the current candidate substring
-
T[0] = -1;
-
T[1] = 0;
-
-
while (pos < len) {
-
// first case: the substring continues
-
if (W[pos-1] == W[cnd]) {
-
cnd++;
-
T[pos] = cnd;
-
pos++;
-
} else if (cnd >0) { // second case: it doesn't, but we can fall back
-
cnd = T[cnd];
-
} else { // third case: we have run out of candidates. Note cnd = 0
-
T[pos] = 0;
-
pos++;
-
}
-
}
-
}
-
}
-
-
#endif //
the test demo kmp_demo.cpp
-
#include <stdio.h>
-
#include <stdlib.h>
-
#include <string.h>
-
#include <time.h>
-
-
#include "kmp.h"
-
using namespace alg;
-
int main(void)
-
{
-
srand(time(NULL));
-
char * S = (char*)malloc(1001);
-
char * W = (char*)malloc(5);
-
-
memset(S,0, 1001);
-
memset(W,0, 5);
-
-
// random genrate a pattern for A, G, C,T
-
const char P[] = {'A', 'G','C','T'};
-
-
for (int i=0;i<1000;i++) {
-
int k = rand()%4;
-
S[i] = P[k];
-
}
-
-
for (int i=0;i<4;i++) {
-
int k = rand()%4;
-
W[i] = P[k];
-
}
-
-
// do a search for W from S
-
int pos = kmp_search(S, W);
-
printf("to be searched:%s\n", W);
-
-
if (pos > 0) {
-
printf("found in pos:%d\n", pos);
-
printf("text:\n%.*s", pos, S);
-
printf("\033[31m%s\033[0m", W);
-
printf("%s\n",&S[pos + strlen(W)]);
-
}
-
}
阅读(1045) | 评论(0) | 转发(0) |